Galaxy Community Conference 2016 (GCC16) has ended

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Galaxy Community Conference 2016 (GCC16)

Visit the main conference website: http://galaxyproject.org/gcc2016

Yvan Le Bras

French National Museum of Natural History
Research engineer
Concarneau, FRANCE

6:00pm EDT

Conference desk open IMU East Lounge

9:00am EDT

Conference desk open LIB: Lobby, Herman B Wells Library Hackathon Breakfast LIB: Room E174, Herman B Wells Library

10:00am EDT

Data Hackathon LIB: Scholars' Commons - Hazelbaker Lecture Hall, Herman B Wells Library

9:00am EDT

Hackathon Breakfast LIB: Room E174, Herman B Wells Library

10:00am EDT

Data Hackathon LIB: Scholars' Commons - Hazelbaker Lecture Hall, Herman B Wells Library

3:30pm EDT

RNA-seq analysis with Galaxy, using advanced workflows IMU Oak RoomJessica Chung • Simon Gladman • Pip Griffin • Annette McGrath • Torsten Seemann

7:30pm EDT

Galactically Speaking: Best Practices and Resources for Galaxy Training IMU Oak RoomGalaxy Training Network Members

9:00am EDT

Dynamic prototyping of tools with Galaxy ProTo IMU Walnut RoomAbdulrahman Azab • Boris Simovski

11:30am EDT

Training lunch (catered) IMU East Lounge European Galaxy developer school Birds-of-a-feather IMU Oak RoomChristophe Caron • Frederik Coppens • Jean-François Dufayard

3:30pm EDT

RADseq Data Analysis Through STACKS on Galaxy IMU Sassafras RoomYvan Le Bras • Anthony Bretaudeau • Gildas Le Corguillé

7:00pm EDT

Opening Reception with Bus Schedule Cyberinfrastructure Building

9:00pm EDT

GalaxyScientists Revival Birds-of-a-feather IMU Oak RoomFrederik Coppens • Jennifer Hillman-Jackson • Christian Schudoma

9:00am EDT

Opening and Welcome IMU Alumni HallRobert Ping

9:15am EDT

Keynote: Genomic variation. Impact of regulatory variation from RNA to protein IMU Alumni HallYoav Gilad

10:00am EDT

Proteogenomics in Galaxy: Identifying novel ‘constellations’ of proteoforms using transcriptomic and proteomic data. IMU Alumni HallPratik Jagtap

10:20am EDT

An Interactive Tool for Reproducible Analysis of Affinity Proteomics Data IMU Alumni HallPaul A. Stewart

10:40am EDT

Break IMU Solarium

11:10am EDT

Coevolution of biological research and cyberinfrastructure from now till the end of Moore’s Law IMU Alumni HallCraig A. Stewart

11:40am EDT

Sample Size Does Matter: Scaling Up Analysis in Galaxy with Metagenomics IMU Alumni HallDaniel Blankenberg

12:00pm EDT

FROGS: Find Rapidly OTU with Galaxy Solution IMU Alumni HallYvan Le Bras

12:20pm EDT

Ktoolu and idFusion - Galaxy Solutions for Plant Immunity and Pathogen Informatics IMU Alumni HallChristian Schudoma

1:40pm EDT

Galaxy Community Update IMU Alumni HallJeremy Goecks • Anton Nekrutenko • James Taylor

2:15pm EDT

GSuite Tools: integrative genomic analyses across cells and epigenetic factors using Galaxy IMU Alumni HallBoris Simovski

2:35pm EDT

The Galaxy workflow for epigenetic profiling of progressing melanoma IMU Alumni HallKatarzyna Murat • Krzysztof Poterlowicz

2:55pm EDT

Infinite Galaxy! IMU Alumni HallBrian Finley

3:10pm EDT

P03: Using Galaxy with Jetstream IMU SolariumEnis Afgan • Jeremy Fischer P09: A Galaxy Interactive Environment for exploring the Neo4J Graph Database IMU SolariumPeter van Heusden • Lose Thoba P11: Apollo: Collaborative Manual Annotation for Genomic Sequencing Projects IMU SolariumNathan Dunn P13: Galaxy as a Platform for Genome Annotation and Scalable Big Data Training IMU SolariumRémi Marenco P17: FROGS: Find Rapidly OTU with Galaxy Solution IMU SolariumYvan Le Bras P21: The TRUElncRNA workflow: A Galaxy based workflow for identification of novel and known high confidence long non-coding RNAs. IMU SolariumMohammad Heydarian P23: A Multi-omics Visualization Platform (MVP) Plug-in for Galaxy-based Applications IMU SolariumJames Johnson P25: Recent developments and new directions for the Galaxy-P project IMU SolariumTimothy J. Griffin P27: GeneSeqToFamily: the Ensembl GeneTree pipeline as a Galaxy workflow IMU SolariumNicola Soranzo D05: Apollo: Manual Annotation in Galaxy IMU SolariumNathan Dunn D07: Galaxy as a Platform for Genome Annotation and Scalable Big Data Training IMU SolariumRémi Marenco D09: CosmicNotes - Write your daily lab notebook entries within Galaxy. IMU SolariumFabrice Hess

4:45pm EDT

Lightning Talks IMU Alumni Hall

5:23pm EDT

65 millions of observers IMU Alumni HallYvan Le Bras

5:30pm EDT

Dinner & Socializing (on your own) TBA

9:00am EDT

Session 5 IMU Alumni HallScott Michaels Welcome Day 2 IMU Alumni Hall

9:10am EDT

Enhancements to Galaxy for delivering on NIH Commons IMU Alumni HallRavi K. Madduri

9:30am EDT

Moving data from the warehouse to the workbench: a bridge to Galaxy from the Tripal community genome database software platform IMU Alumni HallMargaret Staton

9:50am EDT

Apollo: Collaborative Manual Annotation for Genomic Sequencing Projects IMU Alumni HallNathan Dunn

10:10am EDT

Accurate and Complete Gene Construction with EvidentialGene Pipeline IMU Alumni HallDon Gilbert

11:00am EDT

Galaxy security practices in an age of clinical data for point of care services IMU Alumni HallCarrie Ganote

11:20am EDT

Increasing Beer Time: Decreasing the Galaxy System Administration Burden IMU Alumni HallNate Coraor

11:40am EDT

The Intergalactic Utilities Commission - driving Galaxy tool development IMU Alumni HallBjorn Gruning

12:00pm EDT

Planemo – A Scientific Workflow SDK IMU Alumni HallJohn Chilton

12:20pm EDT

CloudLaunch as a multi-cloud, multi-application launch platform IMU Alumni HallEnis Afgan

1:40pm EDT

FlowGalaxy: Developing a workflow for Flow Cytometry Analysis in Galaxy IMU Alumni HallCristel G. Thomas

2:00pm EDT

Outbreak surveillance and investigation using IRIDA and SNVPhyl IMU Alumni HallAaron Petkau

2:40pm EDT

Chemflow, chemometrics using Galaxy IMU Alumni HallVirginie Rossard

3:15pm EDT

P02: Science Gateways Community Institute IMU SolariumSuresh Marru • Nancy Wilkins-Diehr P04: Dynamic Tool Destination – A universal rule based job to destination mapper IMU SolariumEric Enns P08: COMBAT TB Explorer, a TB data exploration workbench IMU SolariumPeter van Heusden • Ziphozakhe Mashologu P10: A resource for metabolomics and transcriptomics analysis IMU SolariumManhoi Hur P12: A Galaxy Workflow for the Generation of Synthetic FASTQ Samples IMU SolariumMichael Ta P16: Comparison of Metagenomics Taxonomy Assignment Methods: Popular Softwares and NCBI Mega-Blast IMU SolariumHuaiying Lin P24: Sequence Data Analysis and the Clinical Genomics Database IMU SolariumJohn H. Letaw P26: National Resource for Translational and Developmental Proteomics Galaxy Portal IMU SolariumJoseph Greer D02: The Genomics Virtual Lab - A turnkey Galaxy platform for the cloud IMU SolariumSimon Gladman D04: Managing Galaxy services with Ansible and GalaxyKickstart IMU SolariumMarius van den Beek D06: BLAST with JBrowse and Galaxy IMU SolariumEric Yao

4:30pm EDT

Lightning Talks IMU Alumni Hall