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Galaxy Community Conference 2016 (GCC16)
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A. Help
B. Networking & Sustenance
C. Hackathon
D.1 Training - Using
D.2 Training - General
D.3 Training - Deploy & Develop
D.x Training - All
E.1 Conference - Talks
E.2 Conference - Posters
E.3 Conference - Demos
E.4 Conference - Sponsors
E.5 Conference - Lightning
E.6 Birds-of-a-feather
E.x Conference - All
Popular
SK
sungyun kang
inidana university
research staff
Saturday
, June 25
9:00am EDT
Conference desk open
LIB: Lobby, Herman B Wells Library
10:00am EDT
Coding Hackathon
LIB: Scholars' Commons - IQ-Wall, Herman B Wells Library
Data Hackathon
LIB: Scholars' Commons - Hazelbaker Lecture Hall, Herman B Wells Library
7:00pm EDT
Training Office Hours
LIB: Lobby, Herman B Wells Library
Sunday
, June 26
8:00am EDT
Conference desk open
IMU Conference Lounge
9:00am EDT
Introduction to Galaxy
IMU Persimmon Room
Anton Nekrutenko
Metagenomics with Galaxy
IMU Maple Room
Dan Blankenberg
Galaxy Architecture
IMU Oak Room
John Chilton • Nate Coraor
Setting up a Galaxy instance as a service
IMU Sassafras Room
Jochen Bick • Hans-Rudolf Hotz • Nikolay Aleksandrov Vazov
The Galaxy Docker Project
IMU Walnut Room
Enis Afgan • Marius van den Beek • Bjorn Gruning
10:00am EDT
Coding Hackathon
LIB: Scholars' Commons - IQ-Wall, Herman B Wells Library
Data Hackathon
LIB: Scholars' Commons - Hazelbaker Lecture Hall, Herman B Wells Library
11:30am EDT
Training lunch (catered)
IMU Conference Lounge
12:30pm EDT
Human Variant Calling with Galaxy
IMU Persimmon Room
Jessica Chung • Simon Gladman • Pip Griffin • Annette McGrath • Torsten Seemann
Beyond the Intro: Further adventures in using Galaxy
IMU Sassafras Room
Dan Blankenberg
Get your own Galaxy within minutes
IMU Maple Room
Enis Afgan • Nuwan Goonasekera • Nitesh Turaga
The Galaxy Database Schema
IMU Oak Room
Dave Clements • Hans-Rudolf Hotz
Writing & Publishing Galaxy Tools
IMU Walnut Room
Marius van den Beek • Dave Bouvier • John Chilton • Bjorn Gruning • Nicola Soranzo
3:00pm EDT
Training Break
IMU Conference Lounge
3:30pm EDT
ChIPseq analysis using deepTools and MACS
IMU Walnut Room
Devon Ryan
RNA-seq analysis with Galaxy, using advanced workflows
IMU Oak Room
Jessica Chung • Simon Gladman • Pip Griffin • Annette McGrath • Torsten Seemann
BioinforMagic: Marrying Galaxy and Bioconductor
IMU Sassafras Room
Mallory Freeberg • Nitesh Turaga
How to use Galaxy Ansible Playbooks
IMU Maple Room
Enis Afgan • Nate Coraor
Introduction to Galaxy Interactive Environments
IMU Persimmon Room
Marius van den Beek • John Chilton • Bjorn Gruning
7:30pm EDT
Galactically Speaking: Best Practices and Resources for Galaxy Training
IMU Oak Room
Galaxy Training Network Members
8:30pm EDT
Training Office Hours
IMU Hoosier Room
Monday
, June 27
8:00am EDT
Conference desk open
IMU Conference Lounge
9:00am EDT
Introduction to Galaxy
IMU Sassafras Room
Anton Nekrutenko
Small Genomes de novo Assembly and Scaffolding
IMU Persimmon Room
Jessica Chung • Simon Gladman • Pip Griffin • Annette McGrath • Torsten Seemann
Dynamic prototyping of tools with Galaxy ProTo
IMU Walnut Room
Abdulrahman Azab • Boris Simovski
Galaxy on the Cloud: build it
IMU Maple Room
Enis Afgan • Nuwan Goonasekera
The Galaxy Docker Project
IMU Oak Room
Marius van den Beek • Bjorn Gruning
11:30am EDT
Training lunch (catered)
IMU East Lounge
Birds-of-a-Feather Flocking
IMU: Indiana Memorial Union
12:30pm EDT
Beyond the Intro: Further adventures in using Galaxy
IMU Persimmon Room
Dan Blankenberg
Small Genome Annotation
IMU Maple Room
Jessica Chung • Simon Gladman • Pip Griffin • Annette McGrath • Torsten Seemann
Using Galaxy for proteomic and integrative multi-omic data analysis
IMU Walnut Room
Tim Griffin • Pratik Jagtap • James Johnson
Advanced Topics in Galaxy Tool Development
IMU Oak Room
Marius van den Beek • Dave Bouvier • John Chilton • Bjorn Gruning • Nicola Soranzo
Contributing Code to the Galaxy Project
IMU Sassafras Room
Dannon Baker
3:00pm EDT
Training Break
IMU Conference Lounge
3:30pm EDT
RADseq Data Analysis Through STACKS on Galaxy
IMU Sassafras Room
Yvan Le Bras • Anthony Bretaudeau • Gildas Le Corguillé
RNA-seq analysis with Galaxy, using advanced workflows
IMU Persimmon Room
Jessica Chung • Simon Gladman • Pip Griffin • Annette McGrath • Torsten Seemann
Visualization of Omics Datasets in Galaxy
IMU Maple Room
Jeremy Goecks • Sam Guerler
Advanced Topics in Galaxy Interactive Environments
IMU Oak Room
Marius van den Beek • Dave Bouvier • John Chilton • Bjorn Gruning
Scripting Galaxy using the API and BioBlend
IMU Walnut Room
Dannon Baker • Nicola Soranzo
7:00pm EDT
Opening Reception with Bus Schedule
Cyberinfrastructure Building
Tuesday
, June 28
9:00am EDT
Opening and Welcome
IMU Alumni Hall
Robert Ping
Session 1
IMU Alumni Hall
Robert Ping
9:15am EDT
Keynote: Genomic variation. Impact of regulatory variation from RNA to protein
IMU Alumni Hall
Yoav Gilad
10:00am EDT
Proteogenomics in Galaxy: Identifying novel ‘constellations’ of proteoforms using transcriptomic and proteomic data.
IMU Alumni Hall
Pratik Jagtap
10:20am EDT
An Interactive Tool for Reproducible Analysis of Affinity Proteomics Data
IMU Alumni Hall
Paul A. Stewart
10:40am EDT
Break
IMU Solarium
11:10am EDT
Session 2
IMU Alumni Hall
Tea Muelia
11:40am EDT
Sample Size Does Matter: Scaling Up Analysis in Galaxy with Metagenomics
IMU Alumni Hall
Dan Blankenberg
12:00pm EDT
FROGS: Find Rapidly OTU with Galaxy Solution
IMU Alumni Hall
Yvan Le Bras
12:20pm EDT
Ktoolu and idFusion - Galaxy Solutions for Plant Immunity and Pathogen Informatics
IMU Alumni Hall
Christian Schudoma
12:40pm EDT
Birds-of-a-Feather Flocking
IMU: Indiana Memorial Union
Lunch (catered)
IMU Solarium
1:40pm EDT
Galaxy Community Update
IMU Alumni Hall
Jeremy Goecks • Anton Nekrutenko • James Taylor
Session 3
IMU Alumni Hall
Chris Hemmerich
2:15pm EDT
GSuite Tools: integrative genomic analyses across cells and epigenetic factors using Galaxy
IMU Alumni Hall
Boris Simovski
2:35pm EDT
The Galaxy workflow for epigenetic profiling of progressing melanoma
IMU Alumni Hall
Katarzyna Murat • Krzysztof Poterlowicz
3:10pm EDT
Poster Session 1: Odd numbers
IMU Solarium
4:25pm EDT
The LAPPS Grid and Galaxy
IMU Alumni Hall
Keith Suderman
Session 4
IMU Alumni Hall
Suzanna Lewis
5:30pm EDT
Dinner & Socializing (on your own)
TBA
7:00pm EDT
Birds-of-a-Feather Flocking
IMU: Indiana Memorial Union
Wednesday
, June 29
8:00am EDT
Conference desk open
IMU Alumni Hall
9:00am EDT
Session 5
IMU Alumni Hall
Scott Michaels
Welcome Day 2
IMU Alumni Hall
9:10am EDT
Enhancements to Galaxy for delivering on NIH Commons
IMU Alumni Hall
Ravi K. Madduri
9:30am EDT
Moving data from the warehouse to the workbench: a bridge to Galaxy from the Tripal community genome database software platform
IMU Alumni Hall
Margaret Staton
9:50am EDT
Apollo: Collaborative Manual Annotation for Genomic Sequencing Projects
IMU Alumni Hall
Nathan Dunn
10:10am EDT
Accurate and Complete Gene Construction with EvidentialGene Pipeline
IMU Alumni Hall
Don Gilbert
10:30am EDT
Break
IMU Solarium
11:00am EDT
Galaxy security practices in an age of clinical data for point of care services
IMU Alumni Hall
Carrie Ganote
Session 6
IMU Alumni Hall
Margaret Staton
11:20am EDT
Increasing Beer Time: Decreasing the Galaxy System Administration Burden
IMU Alumni Hall
Nate Coraor
11:40am EDT
The Intergalactic Utilities Commission - driving Galaxy tool development
IMU Alumni Hall
Bjorn Gruning
12:00pm EDT
Planemo – A Scientific Workflow SDK
IMU Alumni Hall
John Chilton
12:20pm EDT
CloudLaunch as a multi-cloud, multi-application launch platform
IMU Alumni Hall
Enis Afgan
12:40pm EDT
Birds-of-a-Feather Flocking
IMU: Indiana Memorial Union
Lunch (catered)
IMU Solarium
1:40pm EDT
FlowGalaxy: Developing a workflow for Flow Cytometry Analysis in Galaxy
IMU Alumni Hall
Cristel G. Thomas
Session 7
IMU Alumni Hall
Carrie Ganote
2:00pm EDT
Outbreak surveillance and investigation using IRIDA and SNVPhyl
IMU Alumni Hall
Aaron Petkau
2:20pm EDT
Metavisitor, a suite of Galaxy tools and workflows for detection or discovery of viruses in NGS datasets
IMU Alumni Hall
Christophe Antoniewski • Marius van den Beek
2:40pm EDT
Chemflow, chemometrics using Galaxy
IMU Alumni Hall
Virginie Rossard
3:15pm EDT
Poster Session 2: Even numbers
IMU Solarium
Sponsor Exhibition
IMU Solarium
4:30pm EDT
Session 8
IMU Alumni Hall
Nancy Wilkins-Diehr
7:00pm EDT
Conference Dinner
IMU Tudor Room
Timezone
Galaxy Community Conference 2016 (GCC16)
America/New York
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Galaxy Community Conference 2016 (GCC16)
Jun 24
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29, 2016
Friday
, June 24
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, June 25
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, June 26
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, June 27
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, June 28
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, June 29
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Bloomington, IN, United States
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Cyberinfrastructure Building
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IMU Solarium
IMU Tudor Room
IMU Walnut Room
IMU: Indiana Memorial Union
LIB: Room E174, Herman B Wells Library
LIB: Lobby, Herman B Wells Library
LIB: Scholars' Commons - Hazelbaker Lecture Hall, Herman B Wells Library
LIB: Scholars' Commons - IQ-Wall, Herman B Wells Library
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A. Help
B. Networking & Sustenance
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D.1 Training - Using
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D.3 Training - Deploy & Develop
D.x Training - All
E.1 Conference - Talks
E.2 Conference - Posters
E.3 Conference - Demos
E.4 Conference - Sponsors
E.5 Conference - Lightning
E.6 Birds-of-a-feather
E.x Conference - All
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