Galaxy Community Conference 2016 (GCC16) has ended

Create Your Own Event

Galaxy Community Conference 2016 (GCC16)

Visit the main conference website: http://galaxyproject.org/gcc2016

Olivier Inizan

INRA
Versailles - France

9:00am EDT

The Galaxy Docker Project IMU Walnut RoomEnis Afgan • Marius van den Beek • Bjorn Gruning

12:30pm EDT

The Galaxy Database Schema IMU Oak RoomDave Clements • Hans-Rudolf Hotz

3:30pm EDT

How to use Galaxy Ansible Playbooks IMU Maple RoomEnis Afgan • Nate Coraor

9:00am EDT

Dynamic prototyping of tools with Galaxy ProTo IMU Walnut RoomAbdulrahman Azab • Boris Simovski

12:30pm EDT

Advanced Topics in Galaxy Tool Development IMU Oak RoomMarius van den Beek • Dave Bouvier • John Chilton • Bjorn Gruning • Nicola Soranzo

3:30pm EDT

Advanced Topics in Galaxy Interactive Environments IMU Oak RoomMarius van den Beek • Dave Bouvier • John Chilton • Bjorn Gruning

9:15am EDT

Keynote: Genomic variation. Impact of regulatory variation from RNA to protein IMU Alumni HallYoav Gilad

10:00am EDT

Proteogenomics in Galaxy: Identifying novel ‘constellations’ of proteoforms using transcriptomic and proteomic data. IMU Alumni HallPratik Jagtap

10:20am EDT

An Interactive Tool for Reproducible Analysis of Affinity Proteomics Data IMU Alumni HallPaul A. Stewart

10:40am EDT

Break IMU Solarium

11:10am EDT

Coevolution of biological research and cyberinfrastructure from now till the end of Moore’s Law IMU Alumni HallCraig A. Stewart Session 2 IMU Alumni HallTea Muelia

11:40am EDT

Sample Size Does Matter: Scaling Up Analysis in Galaxy with Metagenomics IMU Alumni HallDaniel Blankenberg

12:00pm EDT

FROGS: Find Rapidly OTU with Galaxy Solution IMU Alumni HallYvan Le Bras

12:20pm EDT

Ktoolu and idFusion - Galaxy Solutions for Plant Immunity and Pathogen Informatics IMU Alumni HallChristian Schudoma

12:40pm EDT

Lunch (catered) IMU Solarium

1:40pm EDT

Galaxy Community Update IMU Alumni HallJeremy Goecks • Anton Nekrutenko • James Taylor

2:15pm EDT

GSuite Tools: integrative genomic analyses across cells and epigenetic factors using Galaxy IMU Alumni HallBoris Simovski

2:35pm EDT

The Galaxy workflow for epigenetic profiling of progressing melanoma IMU Alumni HallKatarzyna Murat • Krzysztof Poterlowicz

2:55pm EDT

Infinite Galaxy! IMU Alumni HallBrian Finley

3:10pm EDT

P01: ELIXIR: a distributed infrastructure for life-science information IMU SolariumFrederik Coppens P03: Using Galaxy with Jetstream IMU SolariumEnis Afgan • Jeremy Fischer P05: Advantages and Challenges of Using Galaxy CloudMan within an Integrated Data Analysis and Visualization Platform IMU SolariumIlya Sytchev P07: Hardwood Genomics Database (HGD): a web portal and database resource for hardwood tree genomic and genetic research IMU SolariumMing Chen • Margaret Staton P09: A Galaxy Interactive Environment for exploring the Neo4J Graph Database IMU SolariumPeter van Heusden • Lose Thoba P11: Apollo: Collaborative Manual Annotation for Genomic Sequencing Projects IMU SolariumNathan Dunn P13: Galaxy as a Platform for Genome Annotation and Scalable Big Data Training IMU SolariumRémi Marenco P15: MYcrobiota: An open-source, user-friendly Galaxy application for microbiota determination and dynamic reporting from 16S sequences IMU SolariumSaskia Hiltemann P17: FROGS: Find Rapidly OTU with Galaxy Solution IMU SolariumYvan Le Bras P19: Interaction Analysis of Vancomycin-Resistome from RNA-seq Data using Galaxy and Functional Examination of sRNA241 in S. aureus IMU SolariumDevika Subramanian P21: The TRUElncRNA workflow: A Galaxy based workflow for identification of novel and known high confidence long non-coding RNAs. IMU SolariumMohammad Heydarian P23: A Multi-omics Visualization Platform (MVP) Plug-in for Galaxy-based Applications IMU SolariumJames Johnson P25: Recent developments and new directions for the Galaxy-P project IMU SolariumTimothy J. Griffin P27: GeneSeqToFamily: the Ensembl GeneTree pipeline as a Galaxy workflow IMU SolariumNicola Soranzo P29: Trinity CTAT: A Community Resource for De Novo andReference-based RNA-Seq Analysis IMU SolariumAsma Bankapur D01: Demonstrating Galaxy with Jetstream IMU SolariumEnis Afgan • Jeremy Fischer D03: Advantages and Challenges of Using Galaxy CloudMan within an Integrated Data Analysis and Visualization Platform IMU SolariumIlya Sytchev D05: Apollo: Manual Annotation in Galaxy IMU SolariumNathan Dunn D07: Galaxy as a Platform for Genome Annotation and Scalable Big Data Training IMU SolariumRémi Marenco D09: CosmicNotes - Write your daily lab notebook entries within Galaxy. IMU SolariumFabrice Hess Demo Session 1: Odd numbers IMU Solarium

4:25pm EDT

The LAPPS Grid and Galaxy IMU Alumni HallKeith Suderman

5:30pm EDT

Dinner & Socializing (on your own) TBA

9:10am EDT

Enhancements to Galaxy for delivering on NIH Commons IMU Alumni HallRavi K. Madduri

9:30am EDT

Moving data from the warehouse to the workbench: a bridge to Galaxy from the Tripal community genome database software platform IMU Alumni HallMargaret Staton

9:50am EDT

Apollo: Collaborative Manual Annotation for Genomic Sequencing Projects IMU Alumni HallNathan Dunn

10:10am EDT

Accurate and Complete Gene Construction with EvidentialGene Pipeline IMU Alumni HallDon Gilbert

10:30am EDT

Break IMU Solarium

11:00am EDT

Galaxy security practices in an age of clinical data for point of care services IMU Alumni HallCarrie Ganote

11:20am EDT

Increasing Beer Time: Decreasing the Galaxy System Administration Burden IMU Alumni HallNate Coraor

11:40am EDT

The Intergalactic Utilities Commission - driving Galaxy tool development IMU Alumni HallBjorn Gruning

12:00pm EDT

Planemo – A Scientific Workflow SDK IMU Alumni HallJohn Chilton

12:20pm EDT

CloudLaunch as a multi-cloud, multi-application launch platform IMU Alumni HallEnis Afgan

12:40pm EDT

Lunch (catered) IMU Solarium

1:40pm EDT

FlowGalaxy: Developing a workflow for Flow Cytometry Analysis in Galaxy IMU Alumni HallCristel G. Thomas

2:00pm EDT

Outbreak surveillance and investigation using IRIDA and SNVPhyl IMU Alumni HallAaron Petkau

2:20pm EDT

Metavisitor, a suite of Galaxy tools and workflows for detection or discovery of viruses in NGS datasets IMU Alumni HallChristophe Antoniewski • Marius van den Beek

2:40pm EDT

Chemflow, chemometrics using Galaxy IMU Alumni HallVirginie Rossard

3:15pm EDT

P02: Science Gateways Community Institute IMU SolariumSuresh Marru • Nancy Wilkins-Diehr P04: Dynamic Tool Destination – A universal rule based job to destination mapper IMU SolariumEric Enns P08: COMBAT TB Explorer, a TB data exploration workbench IMU SolariumPeter van Heusden • Ziphozakhe Mashologu P10: A resource for metabolomics and transcriptomics analysis IMU SolariumManhoi Hur P12: A Galaxy Workflow for the Generation of Synthetic FASTQ Samples IMU SolariumMichael Ta P14: Outbreak surveillance and investigation using IRIDA and SNVPhyl IMU SolariumAaron Petkau P16: Comparison of Metagenomics Taxonomy Assignment Methods: Popular Softwares and NCBI Mega-Blast IMU SolariumHuaiying Lin P18: Examining Genomic Variants in a Polymorphic Species IMU SolariumJennifer Callaway P20: Analysis of small non-coding RNAs of poorly annotated species in Galaxy with the help of ortholog information of well annotated species IMU SolariumJochen Bick P22: SeqResults for development of RNA-seq reagents IMU SolariumBrad Langhorst • Timur Shtatland P24: Sequence Data Analysis and the Clinical Genomics Database IMU SolariumJohn H. Letaw P26: National Resource for Translational and Developmental Proteomics Galaxy Portal IMU SolariumJoseph Greer P28: Aligning with Architecture for NGS IMU SolariumJohn C. Hoag D02: The Genomics Virtual Lab - A turnkey Galaxy platform for the cloud IMU SolariumSimon Gladman D04: Managing Galaxy services with Ansible and GalaxyKickstart IMU SolariumMarius van den Beek D06: BLAST with JBrowse and Galaxy IMU SolariumEric Yao D08: MiModD - a streamlined tool suite for genetic variant identification and mapping with Galaxy IMU SolariumWolfgang Maier D10: PMR (Plant/Eukaryotic and Microbial Systems Resource) and its Science app using Araport IMU SolariumManhoi Hur

5:50pm EDT

Conference Closing IMU Alumni HallMarilyne

7:00pm EDT

Conference Dinner IMU Tudor Room