Galaxy Community Conference 2016 (GCC16) has ended

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Galaxy Community Conference 2016 (GCC16)

Visit the main conference website: http://galaxyproject.org/gcc2016

Nathan Dunn

Lawrence Berkeley National Lab
Software Developer
Berkeley, CA

9:00am EDT

Conference desk open LIB: Lobby, Herman B Wells Library

10:00am EDT

Coding Hackathon LIB: Scholars' Commons - IQ-Wall, Herman B Wells Library

8:00am EDT

Training Breakfast IMU Conference Lounge

9:00am EDT

The Galaxy Docker Project IMU Walnut RoomEnis Afgan • Marius van den Beek • Bjorn Gruning

11:30am EDT

Training lunch (catered) IMU Conference Lounge

12:30pm EDT

Writing & Publishing Galaxy Tools IMU Walnut RoomMarius van den Beek • Dave Bouvier • John Chilton • Bjorn Gruning • Nicola Soranzo

3:30pm EDT

How to use Galaxy Ansible Playbooks IMU Maple RoomEnis Afgan • Nate Coraor Introduction to Galaxy Interactive Environments IMU Persimmon RoomMarius van den Beek • John Chilton • Bjorn Gruning

9:00am EDT

Small Genomes de novo Assembly and Scaffolding IMU Persimmon RoomJessica Chung • Simon Gladman • Pip Griffin • Annette McGrath • Torsten Seemann

11:30am EDT

Training lunch (catered) IMU East Lounge Birds-of-a-Feather Flocking IMU: Indiana Memorial Union

12:30pm EDT

Small Genome Annotation IMU Maple RoomJessica Chung • Simon Gladman • Pip Griffin • Annette McGrath • Torsten Seemann Advanced Topics in Galaxy Tool Development IMU Oak RoomMarius van den Beek • Dave Bouvier • John Chilton • Bjorn Gruning • Nicola Soranzo

3:30pm EDT

RADseq Data Analysis Through STACKS on Galaxy IMU Sassafras RoomYvan Le Bras • Anthony Bretaudeau • Gildas Le Corguillé

9:00pm EDT

Birds-of-a-Feather Flocking IMU: Indiana Memorial Union

9:00am EDT

Opening and Welcome IMU Alumni HallRobert Ping

9:15am EDT

Keynote: Genomic variation. Impact of regulatory variation from RNA to protein IMU Alumni HallYoav Gilad

11:40am EDT

Sample Size Does Matter: Scaling Up Analysis in Galaxy with Metagenomics IMU Alumni HallDaniel Blankenberg

12:40pm EDT

Birds-of-a-Feather Flocking IMU: Indiana Memorial Union Lunch (catered) IMU Solarium Genome Annotation Birds-of-a-feather IMU Oak RoomNathan Dunn • Suzanna Lewis

1:40pm EDT

Galaxy Community Update IMU Alumni HallJeremy Goecks • Anton Nekrutenko • James Taylor

3:10pm EDT

P01: ELIXIR: a distributed infrastructure for life-science information IMU SolariumFrederik Coppens P03: Using Galaxy with Jetstream IMU SolariumEnis Afgan • Jeremy Fischer P05: Advantages and Challenges of Using Galaxy CloudMan within an Integrated Data Analysis and Visualization Platform IMU SolariumIlya Sytchev P07: Hardwood Genomics Database (HGD): a web portal and database resource for hardwood tree genomic and genetic research IMU SolariumMing Chen • Margaret Staton P09: A Galaxy Interactive Environment for exploring the Neo4J Graph Database IMU SolariumPeter van Heusden • Lose Thoba P11: Apollo: Collaborative Manual Annotation for Genomic Sequencing Projects IMU SolariumNathan Dunn P13: Galaxy as a Platform for Genome Annotation and Scalable Big Data Training IMU SolariumRémi Marenco D03: Advantages and Challenges of Using Galaxy CloudMan within an Integrated Data Analysis and Visualization Platform IMU SolariumIlya Sytchev D05: Apollo: Manual Annotation in Galaxy IMU SolariumNathan Dunn D07: Galaxy as a Platform for Genome Annotation and Scalable Big Data Training IMU SolariumRémi Marenco D09: CosmicNotes - Write your daily lab notebook entries within Galaxy. IMU SolariumFabrice Hess

4:45pm EDT

Lightning Talks IMU Alumni Hall

9:00am EDT

Welcome Day 2 IMU Alumni Hall

9:10am EDT

Enhancements to Galaxy for delivering on NIH Commons IMU Alumni HallRavi K. Madduri

9:30am EDT

Moving data from the warehouse to the workbench: a bridge to Galaxy from the Tripal community genome database software platform IMU Alumni HallMargaret Staton

9:50am EDT

Apollo: Collaborative Manual Annotation for Genomic Sequencing Projects IMU Alumni HallNathan Dunn

10:10am EDT

Accurate and Complete Gene Construction with EvidentialGene Pipeline IMU Alumni HallDon Gilbert

11:00am EDT

Galaxy security practices in an age of clinical data for point of care services IMU Alumni HallCarrie Ganote Session 6 IMU Alumni HallMargaret Staton

12:00pm EDT

Planemo – A Scientific Workflow SDK IMU Alumni HallJohn Chilton

1:40pm EDT

FlowGalaxy: Developing a workflow for Flow Cytometry Analysis in Galaxy IMU Alumni HallCristel G. Thomas

3:15pm EDT

P16: Comparison of Metagenomics Taxonomy Assignment Methods: Popular Softwares and NCBI Mega-Blast IMU SolariumHuaiying Lin P24: Sequence Data Analysis and the Clinical Genomics Database IMU SolariumJohn H. Letaw D02: The Genomics Virtual Lab - A turnkey Galaxy platform for the cloud IMU SolariumSimon Gladman D04: Managing Galaxy services with Ansible and GalaxyKickstart IMU SolariumMarius van den Beek D06: BLAST with JBrowse and Galaxy IMU SolariumEric Yao

4:30pm EDT

Lightning Talks IMU Alumni Hall

5:36pm EDT

The Monarch Initiative and Phenopackets Wrapped IMU Alumni HallSuzanna Lewis • Nathan Dunn

7:00pm EDT

Conference Dinner IMU Tudor Room

My Moderators Sessions

12:40pm EDT

Genome Annotation Birds-of-a-feather IMU Oak RoomNathan Dunn • Suzanna Lewis