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Wednesday, June 29 • 5:08pm - 5:15pm
Distributing Galaxy Data Through CVMFS

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Slides    doi: 10.7490/f1000research.1112754.1

GenAP is a Canadian platform that provides Galaxy instances across different Canadian HPC centers. Having more that 7 TB of reference genomes, replicating this data in all HPC centers becomes expensive and hard to keep in synch. Cern VM files system (CVMFS) allow us to centralize the provisioning, replicate the data and distribute genome references on demand. In CVMFS the local machine only imports the genomes necessary for the job being run allowing the use of a minimal storage by the HCP centers.


Presenters
avatar for David Morais

David Morais

Bioinformatics specialist, Compute Canada