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Tuesday, June 28 • 4:48pm - 4:55pm
SeqResults - Simple comparisons of results across libraries

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Slides

Authors

  • Brad Langhorst, New England Biolabs
Abstract
We have developed SeqResults to enable simple comparision of libraries across experiments. The Galaxy-integrated component captures metadata and results in a relational database. Results are available via a simple web site and Tableau visualizations. SeqResults has recently been extended with RNA-seq features. It aggregates simple metrics like fractions of reads on exons, introns and other genomic regions, average 5'-3' coverage and alignment efficiency. However, summary metrics are only part of the story.  Accurate representation of transcript levels is important to any RNA-seq experiment. We present a simple interface to compare transcript levels as well as 5'-3' coverage profiles of individual transcripts across experiments. SeqResults now contains millions of individual results from 6841 libraries produced during development of NEBNext library preparation reagents.

Presenters