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Wednesday, June 29 • 3:15pm - 4:30pm
D10: PMR (Plant/Eukaryotic and Microbial Systems Resource) and its Science app using Araport

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Authors
Manhoi Hur, Iowa State University
Jason R. Miller, J Craig Venter Institute
Christopher D. Town, J Craig Venter Institute
Erik Ferlanti, J Craig Venter Institute
Irina Belyaeva, J Craig Venter Institute
Eve S. Wurtele, Iowa State University

Abstract

PMR (Plant/Eukaryotic and Microbial Systems Resource) uses a RESTful web API to share omics data and its functionality with researchers. In the demo, I demonstrate usage of PMR and its statistical analysis, including volcano plots, co-analysis of transcriptomic and metabolomic data, and data exploration. In addition, we present a proof-of-concept for the utility of the API as a research science app called PMR Plotter (v0.8), using Araport to provide and visualize Arabidopsis metabolomics data.

Presenters

Attendees (3)