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Tuesday, June 28 • 3:10pm - 4:25pm
P15: MYcrobiota: An open-source, user-friendly Galaxy application for microbiota determination and dynamic reporting from 16S sequences

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Poster    doi:10.7490/f1000research.1112720.1


S.D. Hiltemann, Erasmus University Medical Center
S.A. Boers, Regional Laboratory for Public Health
A. Kriesels, Erasmus University Medical Center
P.J. van der Spek, Erasmus University Medical Center
R.Jansen, Regional Laboratory for Public Health
J.P. Hays, Erasmus University Medical Center
A.P. Stubbs, Erasmus University Medical Center

Microbiota profiling methods are greatly enhancing our insights into the microbial diversity and taxonomy of many different types of environments and ecosystems. These techniques are provided by an extensive array of sophisticated software such as Mothur and QIIME. Whilst many of these applications have graphical user interface (GUI), providing access to these technologies for the research or clinical scientist remains complex.

We have developed a Galaxy workflow for the analysis of metagenomics data using the Mothur suite of tools, incorporating Phinch and Krona for visualisation.
We demonstrate our work using a previously published 16S rRNA gene dataset.

avatar for Saskia Hiltemann

Saskia Hiltemann

Erasmus Medical Center

Tuesday June 28, 2016 3:10pm - 4:25pm EDT
IMU Solarium

Attendees (3)