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Tuesday, June 28 • 5:02pm - 5:09pm
A resource for metabolomics and transcriptomics analysis

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Slides    doi:10.7490/f1000research.1112727.1

Authors

Manhoi Hur, Iowa State University
Jason R. Miller, J Craig Venter Institute
Christopher D. Town, J Craig Venter Institute
Erik Ferlanti, J Craig Venter Institute
Irina Belyaeva, J Craig Venter Institute
Eve Syrkin Wurtele, Iowa State University

Abstract

PMR (Plant/Eukaryotic and Microbial Systems Resource) and its database are a community resource for deposition and analysis of metabolomics data and related transcriptomics data. PMR currently houses terabytes of data and metadata from over 25 species of eukaryotes, and provides a unique resource for computational modeling and hypothesis development. ​ PMR’s web APIs ​enables​ PMR​ ​data and analytic functions ​to integrate with other community resources. ​ In this talk, we introduce​ the​ PMR​ database and illustrate its analytic tools.  We present ​​a proof-of-concept for the utility of the API as a research science app using Araport to provide Arabidopsis metabolomics data​ and its functionality ​to diverse users.

Presenters


Attendees (2)