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Wednesday, June 29 • 3:15pm - 4:30pm
P10: A resource for metabolomics and transcriptomics analysis

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Poster    doi: 10.7490/f1000research.1112741.1


Manhoi Hur, Iowa State University
Jason R. Miller, J Craig Venter Institute
Christopher D. Town (J Craig Venter Institute
Erik Ferlanti, J Craig Venter Institute
Irina Belyaeva, J Craig Venter Institute
Eve Syrkin Wurtele, Iowa State University


PMR (Plant/Eukaryotic and Microbial Systems Resource) and its database are a community resource for deposition and analysis of metabolomics data and related transcriptomics data. PMR currently houses terabytes of data and metadata from over 25 species of eukaryotes, and provides a unique resource for computational modeling and hypothesis development. PMR’s web APIs enables PMR data and analytic functions to integrate with other community resources. In this talk, we introduce the PMR database and illustrate its analytic tools. We present a proof-of-concept for the utility of the API as a research science app using Araport to provide Arabidopsis metabolomics data and its functionality to diverse users.


Wednesday June 29, 2016 3:15pm - 4:30pm EDT
IMU Solarium

Attendees (4)