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Monday, June 27 • 3:30pm - 6:00pm
Visualization of Omics Datasets in Galaxy

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Slidesdoi: 10.7490/f1000research.1112913.1

This workshop will cover visualization in Galaxy for both primary high-throughput sequencing /next-generation sequencing (NGS) analyses—alignments, variants, expression levels, and annotations—as well as visualization of downstream and aggregated datasets using histograms, heat maps, and other numerical plots. First, using datasets from a combined exome and transcriptome (RNA-seq) experiment, participants will visualize data using Galaxy’s genome browser and Circos plot. Participants will learn how to create a genome visualization, add data, configure data, move between a genome browser view and Circos view, and share complex genome visualizations with more than 12 NGS datasets. Second, using an integrated datasets of genomics and other -omics information, participants will create a several numerical plots (e.g., scatter plot, histogram) to gain an overview of the data. Based on insight gained from these visualizations, participants will create a heatmap to identify patterns and potential causal factors. All visualizations will be created, saved, and shared using only Galaxy and a Web browser; no data or software downloads will be necessary.

Prerequisites:

  • A general knowledge of Galaxy (for example, you should be familiar with the material in Galaxy 101 or have attended Introduction to Galaxy).
  • A wi-fi enabled laptop with a modern web browser.  Google Chrome, Firefox and Safari will work best.

Instructors
avatar for Aysam Guerler

Aysam Guerler

Galaxy Project, Johns Hopkins University
avatar for Jeremy Goecks

Jeremy Goecks

Galaxy Project, George Washington University



Attendees (18)