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Sunday, June 26 • 12:30pm - 3:00pm
Writing & Publishing Galaxy Tools

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Tutorial

This session will walk developers and bioinformaticians through the process of taking a working script or application and turning it into a Galaxy tool. It will also cover the basics of using Planemo: a command-line utility to assist in building and publishing Galaxy tools. We will investigate wrapping, common parameters, tool linting, best practices, loading tools into Galaxy, citations, and publishing tools to Github and the Galaxy Tool Shed. Common tips and tricks will be discussed as well as insights from experienced tool developers.

Prerequisites

  • A general knowledge of Galaxy (for example, you should be familiar with the material in Galaxy 101 or have attended Introduction to Galaxy).
  • Knowledge and comfort with the Unix/Linux command line interface and a text editor. If you don't know what cd, mv, rm, mkdir, chmod, grep and so on can do then you will struggle in this workshop.
  • A wi-fi enabled laptop with a modern web browser.  Google Chrome, Firefox and Safari will work best. 

 


Instructors
avatar for Björn Grüning

Björn Grüning

University of Freiburg
avatar for Dave Bouvier

Dave Bouvier

Galaxy Project, Penn State University
avatar for John Chilton

John Chilton

Galaxy Project, Penn State University
avatar for Marius van den Beek

Marius van den Beek

IBPS / Université Pierre et Marie Curie
avatar for Nicola Soranzo

Nicola Soranzo

The Genome Analysis Centre (TGAC)


Attendees (25)