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Sunday, June 26 • 9:00am - 11:30am
Setting up a Galaxy instance as a service

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Slidesdoi:10.7490/f1000research.1113080.1

This session will use a virtual machine image.  Please download the image from here or here or here before GCC2016 starts.  The image is 2.4 GB and will take some time to download.  You will also want to install the latest version of VirtualBox as well.

The talk guidelines (including a link to the slides) can be found here.

In this workshop, you will learn what is important when you set up a Galaxy server from scratch, what are the pitfalls you might run into, how to interact with the potential users of the service you gonna offer, and how to make sure, the Galaxy instance you have set up is really used in the end. After a general introduction, several Galaxy installations are presented. The session will include some demonstrations and hands-on exercises. We will finish with a panel discussion, where we intend to discuss questions from the workshop participants.

Prerequisites:
  • Familiar with the Bioinformatics problems (and their solutions) that wet lab scientists run into.
  • Knowledge and comfort with the Unix/Linux command line interface and a text editor. If you don't know what cd, mv, rm, mkdir, chmod, grep and so on can do then you will struggle in this workshop.

Instructors
avatar for Hans-Rudolf Hotz

Hans-Rudolf Hotz

Friedrich Miescher Institute for Biomedical Research
avatar for Jochen Bick

Jochen Bick

ETH Zürich
avatar for Nikolay Aleksandrov Vazov

Nikolay Aleksandrov Vazov

Senior Engineer, University of Oslo
Galaxy in the context of : | - galaxy - cluster communiction | - authentication and authorization | - resource allocation management (accounting of resources) | - reporting and user/project management in Galaxy | - multiple galaxy server installations with common and customized features (services)



Attendees (8)