Loading…
This event has ended. View the official site or create your own event → Check it out
This event has ended. Create your own
Visit the main conference website:  http://galaxyproject.org/gcc2016
View analytic
Sunday, June 26 • 9:00am - 11:30am
Galaxy Architecture

Sign up or log in to save this to your schedule and see who's attending!

➔ Slides (10.7490/f1000research.1113243.1

Want to know the big picture about what is going on inside Galaxy? This workshop will give participants a practical introduction to the Galaxy code base with a focus on changing those parts of Galaxy most often modified by local deployers and new contributors. 

The workshop will include the following specific content:

  • A description of the various file and top-level directories in the Galaxy code base.
  • An overview of important Python modules - including models, tools, jobs, workflows, visualizations, and API controllers.
  • An overview of important Python objects and concepts in the Galaxy codebase - including the Galaxy transaction object ("trans"), the application object ("app") , and the configuration object ("config").
  • An overview of various plugin extension points.
  • An overview of important JavaScript modules that power the front-end.
  • An overview of important JavaScript concepts used by Galaxy - in particular RequireJS, Backbone MVC, and grunt.
  • An overview of the client build system used to generate compressed JavaScript, cascading stylesheets, and other static web assets.
  • A demonstration of a complete start-to-finish modification of Galaxy - including forking the project on Github, modifying files, running the tests, checking style guidelines, committing the change, pushing it back to your local Github fork, and opening a pull request.
  • A brief description of other projects in the Galaxy ecosystem (CloudMan, the Tool Shed, bioblend, docker-galaxy-stable, Pulsar, and Planemo).

Prerequisites:

  • A general knowledge of Galaxy (for example, you should be familiar with the material in Galaxy 101 or have attended Introduction to Galaxy).
  • Comfort with scripting programming languages (Python and JavaScript will be the most helpful).

 


Instructors
avatar for John Chilton

John Chilton

Galaxy Project, Penn State University
avatar for Nate Coraor

Nate Coraor

Galaxy Project, Penn State University



Attendees (20)