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avatar for Devika Subramanian

Devika Subramanian

Bharathiar University
Research Scholar
Tiruppur Area, India
Saturday, June 25
 

9:00am EDT

Conference desk open LIB: Lobby, Herman B Wells Library Hackathon Breakfast LIB: Room E174, Herman B Wells Library

7:00pm EDT

Training Office Hours LIB: Lobby, Herman B Wells Library
 
Sunday, June 26
 

8:00am EDT

Training Breakfast IMU Conference Lounge

9:00am EDT

Introduction to Galaxy IMU Persimmon RoomAnton Nekrutenko

10:00am EDT

Data Hackathon LIB: Scholars' Commons - Hazelbaker Lecture Hall, Herman B Wells Library

11:30am EDT

Training lunch (catered) IMU Conference Lounge

12:30pm EDT

Get your own Galaxy within minutes IMU Maple RoomEnis Afgan • Nuwan Goonasekera • Nitesh Turaga

3:00pm EDT

Training Break IMU Conference Lounge

3:30pm EDT

RNA-seq analysis with Galaxy, using advanced workflows IMU Oak RoomJessica Chung • Simon Gladman • Pip Griffin • Annette McGrath • Torsten Seemann

7:30pm EDT

Galactically Speaking: Best Practices and Resources for Galaxy Training IMU Oak RoomGalaxy Training Network Members
 
Monday, June 27
 

8:00am EDT

Training Breakfast IMU Conference Lounge

9:00am EDT

Small Genomes de novo Assembly and Scaffolding IMU Persimmon RoomJessica Chung • Simon Gladman • Pip Griffin • Annette McGrath • Torsten Seemann

11:30am EDT

Training lunch (catered) IMU East Lounge Birds-of-a-Feather Flocking IMU: Indiana Memorial Union

12:30pm EDT

Small Genome Annotation IMU Maple RoomJessica Chung • Simon Gladman • Pip Griffin • Annette McGrath • Torsten Seemann

3:00pm EDT

Training Break IMU Conference Lounge

3:30pm EDT

Visualization of Omics Datasets in Galaxy IMU Maple RoomJeremy Goecks • Aysam Guerler

7:00pm EDT

Opening Reception with Bus Schedule Cyberinfrastructure Building

9:00pm EDT

Birds-of-a-Feather Flocking IMU: Indiana Memorial Union
 
Tuesday, June 28
 

8:00am EDT

Breakfast IMU Solarium

9:00am EDT

Opening and Welcome IMU Alumni HallRobert Ping Session 1 IMU Alumni HallRobert Ping

9:15am EDT

Keynote: Genomic variation. Impact of regulatory variation from RNA to protein IMU Alumni HallYoav Gilad

10:00am EDT

Proteogenomics in Galaxy: Identifying novel ‘constellations’ of proteoforms using transcriptomic and proteomic data. IMU Alumni HallPratik Jagtap

10:20am EDT

An Interactive Tool for Reproducible Analysis of Affinity Proteomics Data IMU Alumni HallPaul A. Stewart

10:40am EDT

Break IMU Solarium

11:10am EDT

Coevolution of biological research and cyberinfrastructure from now till the end of Moore’s Law IMU Alumni HallCraig A. Stewart Session 2 IMU Alumni HallTea Muelia

11:40am EDT

Sample Size Does Matter: Scaling Up Analysis in Galaxy with Metagenomics IMU Alumni HallDaniel Blankenberg

12:00pm EDT

FROGS: Find Rapidly OTU with Galaxy Solution IMU Alumni HallYvan Le Bras

12:20pm EDT

Ktoolu and idFusion - Galaxy Solutions for Plant Immunity and Pathogen Informatics IMU Alumni HallChristian Schudoma

12:40pm EDT

Birds-of-a-Feather Flocking IMU: Indiana Memorial Union Lunch (catered) IMU Solarium Genome Annotation Birds-of-a-feather IMU Oak RoomNathan Dunn • Suzanna Lewis

1:40pm EDT

Galaxy Community Update IMU Alumni HallJeremy Goecks • Anton Nekrutenko • James Taylor Session 3 IMU Alumni HallChris Hemmerich

2:15pm EDT

GSuite Tools: integrative genomic analyses across cells and epigenetic factors using Galaxy IMU Alumni HallBoris Simovski

2:35pm EDT

The Galaxy workflow for epigenetic profiling of progressing melanoma IMU Alumni HallKatarzyna Murat • Krzysztof Poterlowicz

2:55pm EDT

Infinite Galaxy! IMU Alumni HallBrian Finley

3:10pm EDT

P19: Interaction Analysis of Vancomycin-Resistome from RNA-seq Data using Galaxy and Functional Examination of sRNA241 in S. aureus IMU SolariumDevika Subramanian P21: The TRUElncRNA workflow: A Galaxy based workflow for identification of novel and known high confidence long non-coding RNAs. IMU SolariumMohammad Heydarian Poster Session 1: Odd numbers IMU Solarium D07: Galaxy as a Platform for Genome Annotation and Scalable Big Data Training IMU SolariumRémi Marenco

4:25pm EDT

The LAPPS Grid and Galaxy IMU Alumni HallKeith Suderman

5:30pm EDT

Dinner & Socializing (on your own) TBA
 
Wednesday, June 29
 

8:00am EDT

Breakfast IMU Solarium

9:00am EDT

Session 5 IMU Alumni HallScott Michaels Welcome Day 2 IMU Alumni Hall

9:10am EDT

Enhancements to Galaxy for delivering on NIH Commons IMU Alumni HallRavi K. Madduri

9:30am EDT

Moving data from the warehouse to the workbench: a bridge to Galaxy from the Tripal community genome database software platform IMU Alumni HallMargaret Staton

9:50am EDT

Apollo: Collaborative Manual Annotation for Genomic Sequencing Projects IMU Alumni HallNathan Dunn

10:10am EDT

Accurate and Complete Gene Construction with EvidentialGene Pipeline IMU Alumni HallDon Gilbert

10:30am EDT

Break IMU Solarium

11:00am EDT

Galaxy security practices in an age of clinical data for point of care services IMU Alumni HallCarrie Ganote Session 6 IMU Alumni HallMargaret Staton

11:20am EDT

Increasing Beer Time: Decreasing the Galaxy System Administration Burden IMU Alumni HallNate Coraor

11:40am EDT

The Intergalactic Utilities Commission - driving Galaxy tool development IMU Alumni HallBjorn Gruning

12:00pm EDT

Planemo – A Scientific Workflow SDK IMU Alumni HallJohn Chilton

12:20pm EDT

CloudLaunch as a multi-cloud, multi-application launch platform IMU Alumni HallEnis Afgan

12:40pm EDT

Birds-of-a-Feather Flocking IMU: Indiana Memorial Union Lunch (catered) IMU Solarium

1:40pm EDT

FlowGalaxy: Developing a workflow for Flow Cytometry Analysis in Galaxy IMU Alumni HallCristel G. Thomas

2:00pm EDT

Outbreak surveillance and investigation using IRIDA and SNVPhyl IMU Alumni HallAaron Petkau

2:20pm EDT

Metavisitor, a suite of Galaxy tools and workflows for detection or discovery of viruses in NGS datasets IMU Alumni HallChristophe Antoniewski • Marius van den Beek

2:40pm EDT

Chemflow, chemometrics using Galaxy IMU Alumni HallVirginie Rossard

3:15pm EDT

P20: Analysis of small non-coding RNAs of poorly annotated species in Galaxy with the help of ortholog information of well annotated species IMU SolariumJochen Bick Poster Session 2: Even numbers IMU Solarium Sponsor Exhibition IMU Solarium

4:30pm EDT

Session 8 IMU Alumni HallNancy Wilkins-Diehr

5:50pm EDT

Conference Closing IMU Alumni HallMarilyne

7:00pm EDT

Conference Dinner IMU Tudor Room