Galaxy Community Conference 2016 (GCC16) has ended

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Galaxy Community Conference 2016 (GCC16)

Visit the main conference website: http://galaxyproject.org/gcc2016

Arthur Eschenlauer

University of Minnesota
Researcher 5
Twin Cities, MN

https://experts.umn.edu/en/persons/art-eschenlauer
https://orcid.org/0000-0002-2882-0508

Art has a Ph.D. in Biochemistry and twenty years experience in the business community supporting Windows and Linux systems and software. Since his return to academia, Art has created tools and developed workflows for proteomic and metabolomic analysis of LC-MS data in Galaxy.

9:00am EDT

Conference desk open LIB: Lobby, Herman B Wells Library

7:00pm EDT

Training Office Hours LIB: Lobby, Herman B Wells Library

8:00am EDT

Conference desk open IMU Conference Lounge

9:00am EDT

Galaxy Architecture IMU Oak RoomJohn Chilton • Nate Coraor

11:30am EDT

Training lunch (catered) IMU Conference Lounge

12:30pm EDT

Writing & Publishing Galaxy Tools IMU Walnut RoomMarius van den Beek • Dave Bouvier • John Chilton • Bjorn Gruning • Nicola Soranzo

3:00pm EDT

Training Break IMU Conference Lounge

3:30pm EDT

BioinforMagic: Marrying Galaxy and Bioconductor IMU Sassafras RoomMallory Freeberg • Nitesh Turaga

7:30pm EDT

Galactically Speaking: Best Practices and Resources for Galaxy Training IMU Oak RoomGalaxy Training Network Members

8:30pm EDT

Training Office Hours IMU Hoosier Room

9:00am EDT

The Galaxy Docker Project IMU Oak RoomMarius van den Beek • Bjorn Gruning

11:30am EDT

Training lunch (catered) IMU East Lounge Birds-of-a-Feather Flocking IMU: Indiana Memorial Union

12:30pm EDT

Advanced Topics in Galaxy Tool Development IMU Oak RoomMarius van den Beek • Dave Bouvier • John Chilton • Bjorn Gruning • Nicola Soranzo

3:00pm EDT

Training Break IMU Conference Lounge

3:30pm EDT

Visualization of Omics Datasets in Galaxy IMU Maple RoomJeremy Goecks • Aysam Guerler

7:00pm EDT

Opening Reception with Bus Schedule Cyberinfrastructure Building

9:00pm EDT

Birds-of-a-Feather Flocking IMU: Indiana Memorial Union

9:00am EDT

Opening and Welcome IMU Alumni HallRobert Ping

9:15am EDT

Keynote: Genomic variation. Impact of regulatory variation from RNA to protein IMU Alumni HallYoav Gilad

10:00am EDT

Proteogenomics in Galaxy: Identifying novel ‘constellations’ of proteoforms using transcriptomic and proteomic data. IMU Alumni HallPratik Jagtap

10:20am EDT

An Interactive Tool for Reproducible Analysis of Affinity Proteomics Data IMU Alumni HallPaul A. Stewart

10:40am EDT

Break IMU Solarium

11:10am EDT

Coevolution of biological research and cyberinfrastructure from now till the end of Moore’s Law IMU Alumni HallCraig A. Stewart

11:40am EDT

Sample Size Does Matter: Scaling Up Analysis in Galaxy with Metagenomics IMU Alumni HallDaniel Blankenberg

12:00pm EDT

FROGS: Find Rapidly OTU with Galaxy Solution IMU Alumni HallYvan Le Bras

12:20pm EDT

Ktoolu and idFusion - Galaxy Solutions for Plant Immunity and Pathogen Informatics IMU Alumni HallChristian Schudoma

12:40pm EDT

Birds-of-a-Feather Flocking IMU: Indiana Memorial Union Lunch (catered) IMU Solarium GalaxyAdmins Birds-of-a-feather IMU SolariumDave Clements • Hans-Rudolf Hotz

1:40pm EDT

Galaxy Community Update IMU Alumni HallJeremy Goecks • Anton Nekrutenko • James Taylor

2:15pm EDT

GSuite Tools: integrative genomic analyses across cells and epigenetic factors using Galaxy IMU Alumni HallBoris Simovski

2:35pm EDT

The Galaxy workflow for epigenetic profiling of progressing melanoma IMU Alumni HallKatarzyna Murat • Krzysztof Poterlowicz

2:55pm EDT

Infinite Galaxy! IMU Alumni HallBrian Finley

3:10pm EDT

P01: ELIXIR: a distributed infrastructure for life-science information IMU SolariumFrederik Coppens P03: Using Galaxy with Jetstream IMU SolariumEnis Afgan • Jeremy Fischer P05: Advantages and Challenges of Using Galaxy CloudMan within an Integrated Data Analysis and Visualization Platform IMU SolariumIlya Sytchev P09: A Galaxy Interactive Environment for exploring the Neo4J Graph Database IMU SolariumPeter van Heusden • Lose Thoba P11: Apollo: Collaborative Manual Annotation for Genomic Sequencing Projects IMU SolariumNathan Dunn P13: Galaxy as a Platform for Genome Annotation and Scalable Big Data Training IMU SolariumRémi Marenco P15: MYcrobiota: An open-source, user-friendly Galaxy application for microbiota determination and dynamic reporting from 16S sequences IMU SolariumSaskia Hiltemann P17: FROGS: Find Rapidly OTU with Galaxy Solution IMU SolariumYvan Le Bras P19: Interaction Analysis of Vancomycin-Resistome from RNA-seq Data using Galaxy and Functional Examination of sRNA241 in S. aureus IMU SolariumDevika Subramanian P21: The TRUElncRNA workflow: A Galaxy based workflow for identification of novel and known high confidence long non-coding RNAs. IMU SolariumMohammad Heydarian P23: A Multi-omics Visualization Platform (MVP) Plug-in for Galaxy-based Applications IMU SolariumJames Johnson P25: Recent developments and new directions for the Galaxy-P project IMU SolariumTimothy J. Griffin P27: GeneSeqToFamily: the Ensembl GeneTree pipeline as a Galaxy workflow IMU SolariumNicola Soranzo D01: Demonstrating Galaxy with Jetstream IMU SolariumEnis Afgan • Jeremy Fischer

4:25pm EDT

The LAPPS Grid and Galaxy IMU Alumni HallKeith Suderman

4:45pm EDT

Lightning Talks IMU Alumni Hall

5:30pm EDT

Dinner & Socializing (on your own) TBA

7:00pm EDT

Birds-of-a-Feather Flocking IMU: Indiana Memorial Union

9:10am EDT

Enhancements to Galaxy for delivering on NIH Commons IMU Alumni HallRavi K. Madduri

9:30am EDT

Moving data from the warehouse to the workbench: a bridge to Galaxy from the Tripal community genome database software platform IMU Alumni HallMargaret Staton

9:50am EDT

Apollo: Collaborative Manual Annotation for Genomic Sequencing Projects IMU Alumni HallNathan Dunn

10:10am EDT

Accurate and Complete Gene Construction with EvidentialGene Pipeline IMU Alumni HallDon Gilbert

10:30am EDT

Break IMU Solarium

11:00am EDT

Galaxy security practices in an age of clinical data for point of care services IMU Alumni HallCarrie Ganote

11:20am EDT

Increasing Beer Time: Decreasing the Galaxy System Administration Burden IMU Alumni HallNate Coraor

11:40am EDT

The Intergalactic Utilities Commission - driving Galaxy tool development IMU Alumni HallBjorn Gruning

12:00pm EDT

Planemo – A Scientific Workflow SDK IMU Alumni HallJohn Chilton

12:20pm EDT

CloudLaunch as a multi-cloud, multi-application launch platform IMU Alumni HallEnis Afgan

12:40pm EDT

Birds-of-a-Feather Flocking IMU: Indiana Memorial Union Lunch (catered) IMU Solarium

1:40pm EDT

FlowGalaxy: Developing a workflow for Flow Cytometry Analysis in Galaxy IMU Alumni HallCristel G. Thomas

2:00pm EDT

Outbreak surveillance and investigation using IRIDA and SNVPhyl IMU Alumni HallAaron Petkau

2:20pm EDT

Metavisitor, a suite of Galaxy tools and workflows for detection or discovery of viruses in NGS datasets IMU Alumni HallChristophe Antoniewski • Marius van den Beek

2:40pm EDT

Chemflow, chemometrics using Galaxy IMU Alumni HallVirginie Rossard

3:15pm EDT

P02: Science Gateways Community Institute IMU SolariumSuresh Marru • Nancy Wilkins-Diehr P04: Dynamic Tool Destination – A universal rule based job to destination mapper IMU SolariumEric Enns P08: COMBAT TB Explorer, a TB data exploration workbench IMU SolariumPeter van Heusden • Ziphozakhe Mashologu P10: A resource for metabolomics and transcriptomics analysis IMU SolariumManhoi Hur P14: Outbreak surveillance and investigation using IRIDA and SNVPhyl IMU SolariumAaron Petkau P18: Examining Genomic Variants in a Polymorphic Species IMU SolariumJennifer Callaway P20: Analysis of small non-coding RNAs of poorly annotated species in Galaxy with the help of ortholog information of well annotated species IMU SolariumJochen Bick P22: SeqResults for development of RNA-seq reagents IMU SolariumBrad Langhorst • Timur Shtatland P24: Sequence Data Analysis and the Clinical Genomics Database IMU SolariumJohn H. Letaw P26: National Resource for Translational and Developmental Proteomics Galaxy Portal IMU SolariumJoseph Greer P28: Aligning with Architecture for NGS IMU SolariumJohn C. Hoag D02: The Genomics Virtual Lab - A turnkey Galaxy platform for the cloud IMU SolariumSimon Gladman D04: Managing Galaxy services with Ansible and GalaxyKickstart IMU SolariumMarius van den Beek D10: PMR (Plant/Eukaryotic and Microbial Systems Resource) and its Science app using Araport IMU SolariumManhoi Hur

4:30pm EDT

Lightning Talks IMU Alumni Hall

5:50pm EDT

Conference Closing IMU Alumni HallMarilyne

7:00pm EDT

Conference Dinner IMU Tudor Room